sklearn.neighbors.RadiusNeighborsRegressor

class sklearn.neighbors.RadiusNeighborsRegressor(radius=1.0, weights='uniform', algorithm='auto', leaf_size=30, p=2, metric='minkowski', metric_params=None, n_jobs=None, **kwargs)[source]

Regression based on neighbors within a fixed radius.

The target is predicted by local interpolation of the targets associated of the nearest neighbors in the training set.

Read more in the User Guide.

Parameters
radiusfloat, optional (default = 1.0)

Range of parameter space to use by default for radius_neighbors queries.

weightsstr or callable

weight function used in prediction. Possible values:

  • ‘uniform’ : uniform weights. All points in each neighborhood are weighted equally.

  • ‘distance’ : weight points by the inverse of their distance. in this case, closer neighbors of a query point will have a greater influence than neighbors which are further away.

  • [callable] : a user-defined function which accepts an array of distances, and returns an array of the same shape containing the weights.

Uniform weights are used by default.

algorithm{‘auto’, ‘ball_tree’, ‘kd_tree’, ‘brute’}, optional

Algorithm used to compute the nearest neighbors:

  • ‘ball_tree’ will use BallTree

  • ‘kd_tree’ will use KDTree

  • ‘brute’ will use a brute-force search.

  • ‘auto’ will attempt to decide the most appropriate algorithm based on the values passed to fit method.

Note: fitting on sparse input will override the setting of this parameter, using brute force.

leaf_sizeint, optional (default = 30)

Leaf size passed to BallTree or KDTree. This can affect the speed of the construction and query, as well as the memory required to store the tree. The optimal value depends on the nature of the problem.

pinteger, optional (default = 2)

Power parameter for the Minkowski metric. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used.

metricstring or callable, default ‘minkowski’

the distance metric to use for the tree. The default metric is minkowski, and with p=2 is equivalent to the standard Euclidean metric. See the documentation of the DistanceMetric class for a list of available metrics. If metric is “precomputed”, X is assumed to be a distance matrix and must be square during fit. X may be a Glossary, in which case only “nonzero” elements may be considered neighbors.

metric_paramsdict, optional (default = None)

Additional keyword arguments for the metric function.

n_jobsint or None, optional (default=None)

The number of parallel jobs to run for neighbors search. None means 1 unless in a joblib.parallel_backend context. -1 means using all processors. See Glossary for more details.

Attributes
effective_metric_string or callable

The distance metric to use. It will be same as the metric parameter or a synonym of it, e.g. ‘euclidean’ if the metric parameter set to ‘minkowski’ and p parameter set to 2.

effective_metric_params_dict

Additional keyword arguments for the metric function. For most metrics will be same with metric_params parameter, but may also contain the p parameter value if the effective_metric_ attribute is set to ‘minkowski’.

See also

NearestNeighbors
KNeighborsRegressor
KNeighborsClassifier
RadiusNeighborsClassifier

Notes

See Nearest Neighbors in the online documentation for a discussion of the choice of algorithm and leaf_size.

https://en.wikipedia.org/wiki/K-nearest_neighbor_algorithm

Examples

>>> X = [[0], [1], [2], [3]]
>>> y = [0, 0, 1, 1]
>>> from sklearn.neighbors import RadiusNeighborsRegressor
>>> neigh = RadiusNeighborsRegressor(radius=1.0)
>>> neigh.fit(X, y)
RadiusNeighborsRegressor(...)
>>> print(neigh.predict([[1.5]]))
[0.5]

Methods

fit(self, X, y)

Fit the model using X as training data and y as target values

get_params(self[, deep])

Get parameters for this estimator.

predict(self, X)

Predict the target for the provided data

radius_neighbors(self[, X, radius, …])

Finds the neighbors within a given radius of a point or points.

radius_neighbors_graph(self[, X, radius, …])

Computes the (weighted) graph of Neighbors for points in X

score(self, X, y[, sample_weight])

Returns the coefficient of determination R^2 of the prediction.

set_params(self, \*\*params)

Set the parameters of this estimator.
__init__(self, radius=1.0, weights='uniform', algorithm='auto', leaf_size=30, p=2, metric='minkowski', metric_params=None, n_jobs=None, **kwargs)[source]

Initialize self. See help(type(self)) for accurate signature.

fit(self, X, y)[source]

Fit the model using X as training data and y as target values

Parameters
X{array-like, sparse matrix, BallTree, KDTree}

Training data. If array or matrix, shape [n_samples, n_features], or [n_samples, n_samples] if metric=’precomputed’.

y{array-like, sparse matrix}
Target values, array of float values, shape = [n_samples]

or [n_samples, n_outputs]

get_params(self, deep=True)[source]

Get parameters for this estimator.

Parameters
deepboolean, optional

If True, will return the parameters for this estimator and contained subobjects that are estimators.

Returns
paramsmapping of string to any

Parameter names mapped to their values.

predict(self, X)[source]

Predict the target for the provided data

Parameters
Xarray-like, shape (n_queries, n_features), or (n_queries, n_indexed) if metric == ‘precomputed’

Test samples.

Returns
yarray of float, shape = [n_queries] or [n_queries, n_outputs]

Target values

radius_neighbors(self, X=None, radius=None, return_distance=True, sort_results=False)[source]

Finds the neighbors within a given radius of a point or points.

Return the indices and distances of each point from the dataset lying in a ball with size radius around the points of the query array. Points lying on the boundary are included in the results.

The result points are not necessarily sorted by distance to their query point.

Parameters
Xarray-like, (n_samples, n_features), optional

The query point or points. If not provided, neighbors of each indexed point are returned. In this case, the query point is not considered its own neighbor.

radiusfloat

Limiting distance of neighbors to return. (default is the value passed to the constructor).

return_distanceboolean, optional. Defaults to True.

If False, distances will not be returned.

sort_resultsboolean, optional. Defaults to False.

If True, the distances and indices will be sorted before being returned. If False, the results will not be sorted. If return_distance == False, setting sort_results = True will result in an error.

New in version 0.22.

Returns
neigh_distarray, shape (n_samples,) of arrays

Array representing the distances to each point, only present if return_distance=True. The distance values are computed according to the metric constructor parameter.

neigh_indarray, shape (n_samples,) of arrays

An array of arrays of indices of the approximate nearest points from the population matrix that lie within a ball of size radius around the query points.

Notes

Because the number of neighbors of each point is not necessarily equal, the results for multiple query points cannot be fit in a standard data array. For efficiency, radius_neighbors returns arrays of objects, where each object is a 1D array of indices or distances.

Examples

In the following example, we construct a NeighborsClassifier class from an array representing our data set and ask who’s the closest point to [1, 1, 1]:

>>> import numpy as np
>>> samples = [[0., 0., 0.], [0., .5, 0.], [1., 1., .5]]
>>> from sklearn.neighbors import NearestNeighbors
>>> neigh = NearestNeighbors(radius=1.6)
>>> neigh.fit(samples)
NearestNeighbors(radius=1.6)
>>> rng = neigh.radius_neighbors([[1., 1., 1.]])
>>> print(np.asarray(rng[0][0]))
[1.5 0.5]
>>> print(np.asarray(rng[1][0]))
[1 2]

The first array returned contains the distances to all points which are closer than 1.6, while the second array returned contains their indices. In general, multiple points can be queried at the same time.

radius_neighbors_graph(self, X=None, radius=None, mode='connectivity', sort_results=False)[source]

Computes the (weighted) graph of Neighbors for points in X

Neighborhoods are restricted the points at a distance lower than radius.

Parameters
Xarray-like, shape = [n_queries, n_features], optional

The query point or points. If not provided, neighbors of each indexed point are returned. In this case, the query point is not considered its own neighbor.

radiusfloat

Radius of neighborhoods. (default is the value passed to the constructor).

mode{‘connectivity’, ‘distance’}, optional

Type of returned matrix: ‘connectivity’ will return the connectivity matrix with ones and zeros, in ‘distance’ the edges are Euclidean distance between points.

sort_resultsboolean, optional. Defaults to False.

If True, the distances and indices will be sorted before being returned. If False, the results will not be sorted. Only used with mode=’distance’.

New in version 0.22.

Returns
Asparse graph in CSR format, shape = [n_queries, n_samples_fit]

n_samples_fit is the number of samples in the fitted data A[i, j] is assigned the weight of edge that connects i to j.

See also

kneighbors_graph

Examples

>>> X = [[0], [3], [1]]
>>> from sklearn.neighbors import NearestNeighbors
>>> neigh = NearestNeighbors(radius=1.5)
>>> neigh.fit(X)
NearestNeighbors(radius=1.5)
>>> A = neigh.radius_neighbors_graph(X)
>>> A.toarray()
array([[1., 0., 1.],
       [0., 1., 0.],
       [1., 0., 1.]])
score(self, X, y, sample_weight=None)[source]

Returns the coefficient of determination R^2 of the prediction.

The coefficient R^2 is defined as (1 - u/v), where u is the residual sum of squares ((y_true - y_pred) ** 2).sum() and v is the total sum of squares ((y_true - y_true.mean()) ** 2).sum(). The best possible score is 1.0 and it can be negative (because the model can be arbitrarily worse). A constant model that always predicts the expected value of y, disregarding the input features, would get a R^2 score of 0.0.

Parameters
Xarray-like, shape = (n_samples, n_features)

Test samples. For some estimators this may be a precomputed kernel matrix instead, shape = (n_samples, n_samples_fitted], where n_samples_fitted is the number of samples used in the fitting for the estimator.

yarray-like, shape = (n_samples) or (n_samples, n_outputs)

True values for X.

sample_weightarray-like, shape = [n_samples], optional

Sample weights.

Returns
scorefloat

R^2 of self.predict(X) wrt. y.

Notes

The R2 score used when calling score on a regressor will use multioutput='uniform_average' from version 0.23 to keep consistent with r2_score. This will influence the score method of all the multioutput regressors (except for MultiOutputRegressor). To specify the default value manually and avoid the warning, please either call r2_score directly or make a custom scorer with make_scorer (the built-in scorer 'r2' uses multioutput='uniform_average').

set_params(self, **params)[source]

Set the parameters of this estimator.

The method works on simple estimators as well as on nested objects (such as pipelines). The latter have parameters of the form <component>__<parameter> so that it’s possible to update each component of a nested object.

Returns
self